SNP Report
Basic Infomation
| Name | rs2741502 dbSNP |
|---|---|
| Location | chr:20,43936265 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13037087 | 0.90[MEX][hapmap] |
| rs17333555 | 0.90[MEX][hapmap] |
| rs1997892 | 0.90[MEX][hapmap] |
| rs2233093 | 0.93[CEU][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2233896 | 0.90[MEX][hapmap] |
| rs2233901 | 0.90[MEX][hapmap] |
| rs2664581 | 0.90[MEX][hapmap] |
| rs2743221 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2743317 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2743345 | 0.80[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs6017513 | 0.90[MEX][hapmap] |
| rs6017519 | 0.90[MEX][hapmap] |
| rs6032055 | 0.90[MEX][hapmap] |
| rs6032104 | 0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs736389 | 1.00[CEU][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MATN4 | Proximal transcriptional regulation |
| MATN4 | Distal transcriptional regulation |
| SDC4 | Distal transcriptional regulation |
| MATN4 | RNA binding protein mediated regulation |
| RBPJL | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| C20orf123 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014