SNP Report
Basic Infomation
| Name | rs2233093 dbSNP |
|---|---|
| Location | chr:20,43933196 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13037087 | 0.89[MEX][hapmap] |
| rs17333555 | 0.89[MEX][hapmap] |
| rs1997892 | 0.89[MEX][hapmap] |
| rs2233896 | 0.89[MEX][hapmap] |
| rs2233901 | 0.89[MEX][hapmap] |
| rs2664581 | 0.89[MEX][hapmap] |
| rs2741502 | 0.93[CEU][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2743221 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2743317 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2743334 | 0.83[CEU][hapmap] |
| rs2743345 | 0.89[EUR][1000 genomes] |
| rs6017513 | 0.89[MEX][hapmap] |
| rs6017519 | 0.89[MEX][hapmap] |
| rs6032055 | 0.89[MEX][hapmap] |
| rs6032104 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs736389 | 0.93[CEU][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.93[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RBPJL | Proximal transcriptional regulation |
| MATN4 | Distal transcriptional regulation |
| SDC4 | Distal transcriptional regulation |
| MATN4 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014