SNP Report
Basic Infomation
| Name | rs2708481 dbSNP |
|---|---|
| Location | chr:12,40559062 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 54)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1031996 | 0.82[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs10748014 | 0.83[JPT][hapmap] |
| rs10784381 | 0.82[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs10784386 | 0.82[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs10878160 | 0.80[YRI][hapmap] |
| rs10878162 | 0.80[YRI][hapmap] |
| rs10878180 | 0.80[YRI][hapmap] |
| rs10878222 | 0.83[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs11175326 | 0.82[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs11175327 | 0.89[ASN][1000 genomes] |
| rs11175656 | 0.83[JPT][hapmap] |
| rs1352876 | 0.82[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs1388590 | 0.90[ASN][1000 genomes] |
| rs1388591 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1463719 | 0.86[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.91[ASN][1000 genomes] |
| rs1472118 | 0.89[JPT][hapmap] |
| rs1491931 | 0.82[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs1844921 | 0.93[ASN][1000 genomes] |
| rs2131082 | 0.88[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2131083 | 0.88[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2170503 | 0.94[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs2248928 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2249010 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2249017 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2307016 | 0.80[YRI][hapmap] |
| rs2404573 | 0.89[JPT][hapmap] |
| rs2638245 | 0.82[CHB][hapmap];0.90[CHD][hapmap];0.83[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs2638253 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2638254 | 0.82[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs2638260 | 0.82[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs2638262 | 0.90[ASN][1000 genomes] |
| rs2638263 | 0.82[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs2638264 | 0.94[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs2638266 | 0.82[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs2638267 | 0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2708449 | 0.82[ASN][1000 genomes] |
| rs2708470 | 0.88[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2708472 | 0.88[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2708473 | 0.82[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs2708476 | 0.88[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2708477 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2708479 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2708480 | 0.82[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs2708482 | 1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2708487 | 1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2708494 | 0.83[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs4360759 | 0.89[JPT][hapmap] |
| rs716231 | 0.82[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs722817 | 0.95[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7306140 | 0.83[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs878010 | 0.90[CHD][hapmap];0.89[JPT][hapmap] |
| rs900253 | 0.90[CHD][hapmap];0.89[JPT][hapmap] |
| rs937109 | 0.82[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs937110 | 0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000223914 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014