SNP Report

Basic Infomation

Name	rs2404573 dbSNP
Location	chr:12,40504495
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 46)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1031996	0.92[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10748014	0.84[JPT][hapmap]
rs10784370	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs10784381	0.93[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10784386	0.93[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10878113	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11175275	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11175326	0.93[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11175327	0.83[ASN][1000 genomes]
rs11175656	0.84[JPT][hapmap]
rs12230710	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1352876	0.85[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1388590	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1388591	0.89[JPT][hapmap]
rs1463719	0.85[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs1472118	0.82[CHB][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1491931	0.93[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2170503	0.93[CEU][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2248928	0.89[JPT][hapmap]
rs2249010	0.89[JPT][hapmap]
rs2249017	0.89[JPT][hapmap]
rs2638245	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs2638254	0.81[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs2638260	0.81[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2638262	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2638263	0.85[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2638264	0.93[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2638266	0.89[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2638267	0.89[JPT][hapmap]
rs2708449	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2708473	0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs2708477	0.89[JPT][hapmap]
rs2708479	0.89[JPT][hapmap]
rs2708480	0.86[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs2708481	0.89[JPT][hapmap]
rs2708494	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs3812791	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4360759	0.93[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap]
rs7132203	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs716231	0.86[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes]
rs7306140	0.89[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs878010	0.92[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs900253	0.92[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs937109	0.93[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs937110	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs937111	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SLC2A13	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)