SNP Report

Basic Infomation

Name	rs2708482 dbSNP
Location	chr:12,40559368
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 43)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1031996	0.88[ASN][1000 genomes]
rs10784381	0.84[ASN][1000 genomes]
rs10784386	0.88[ASN][1000 genomes]
rs10878222	0.81[ASN][1000 genomes]
rs11175326	0.88[ASN][1000 genomes]
rs11175327	0.89[ASN][1000 genomes]
rs1352876	0.80[ASN][1000 genomes]
rs1388590	0.90[ASN][1000 genomes]
rs1388591	0.96[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1463719	0.91[ASN][1000 genomes]
rs1491931	0.90[ASN][1000 genomes]
rs1844921	0.93[ASN][1000 genomes]
rs2131082	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2131083	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2170503	0.82[ASN][1000 genomes]
rs2248928	1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2249010	1.00[CEU][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2249017	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2638245	0.93[ASN][1000 genomes]
rs2638253	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2638254	0.94[ASN][1000 genomes]
rs2638260	0.90[ASN][1000 genomes]
rs2638262	0.90[ASN][1000 genomes]
rs2638263	0.90[ASN][1000 genomes]
rs2638264	0.90[ASN][1000 genomes]
rs2638266	0.90[ASN][1000 genomes]
rs2638267	0.96[CEU][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2708449	0.82[ASN][1000 genomes]
rs2708470	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2708472	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2708473	0.93[ASN][1000 genomes]
rs2708476	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2708477	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708479	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708480	0.94[ASN][1000 genomes]
rs2708481	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708487	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2708494	0.93[ASN][1000 genomes]
rs716231	0.93[ASN][1000 genomes]
rs722817	0.95[CEU][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7306140	0.82[ASN][1000 genomes]
rs937109	0.88[ASN][1000 genomes]
rs937110	0.88[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000223914	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)