SNP Report
Basic Infomation
| Name | rs2600667 dbSNP |
|---|---|
| Location | chr:2,61404931 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1177303 | 0.81[ASN][1000 genomes] |
| rs1177304 | 0.83[AMR][1000 genomes] |
| rs12999245 | 0.81[ASN][1000 genomes] |
| rs1665258 | 0.81[ASN][1000 genomes] |
| rs1665259 | 0.81[ASN][1000 genomes] |
| rs1665260 | 0.81[ASN][1000 genomes] |
| rs1665261 | 0.81[ASN][1000 genomes] |
| rs1665262 | 0.81[ASN][1000 genomes] |
| rs1729671 | 0.81[ASN][1000 genomes] |
| rs1729673 | 0.81[ASN][1000 genomes] |
| rs2167564 | 0.87[ASN][1000 genomes] |
| rs2441466 | 0.85[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2600670 | 0.90[ASN][1000 genomes] |
| rs4671397 | 0.85[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| AHSA2 | Proximal transcriptional regulation |
| PSD4 | Distal transcriptional regulation |
| NUP155 | Distal transcriptional regulation |
| ENSG00000264298 | Distal transcriptional regulation |
| PUS10 | Distal transcriptional regulation |
| PEX13 | Distal transcriptional regulation |
| KIAA1841 | Distal transcriptional regulation |
| XPO1 | Distal transcriptional regulation |
| USP34 | Distal transcriptional regulation |
| PPP3R1 | Distal transcriptional regulation |
| HNRNPH1 | Distal transcriptional regulation |
| AHSA2 | Distal transcriptional regulation |
| ENSG00000228414 | Distal transcriptional regulation |
| REL | Distal transcriptional regulation |
| C2orf74 | Distal transcriptional regulation |
| AHSA2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014