SNP Report
Basic Infomation
| Name | rs2524317 dbSNP |
|---|---|
| Location | chr:12,48110613 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875679 | 0.90[ASN][1000 genomes] |
| rs11609044 | 0.81[ASN][1000 genomes] |
| rs1232985 | 0.95[CHB][hapmap];0.89[CHD][hapmap];0.85[JPT][hapmap] |
| rs1232987 | 0.90[CHB][hapmap];0.84[JPT][hapmap] |
| rs1233046 | 1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs1233047 | 0.95[CHB][hapmap];0.85[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs1233052 | 0.95[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs1233053 | 0.92[ASN][1000 genomes] |
| rs1233055 | 0.95[CHB][hapmap];0.89[CHD][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs1234820 | 0.91[ASN][1000 genomes] |
| rs12580458 | 0.81[ASN][1000 genomes] |
| rs2022526 | 0.95[CHB][hapmap];0.85[JPT][hapmap] |
| rs2155794 | 0.95[CHB][hapmap];0.85[JPT][hapmap] |
| rs2155795 | 0.95[CHB][hapmap];0.89[CHD][hapmap];0.85[JPT][hapmap] |
| rs5006306 | 0.81[ASN][1000 genomes] |
| rs61917615 | 0.81[ASN][1000 genomes] |
| rs948392 | 0.94[CHB][hapmap];0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000257433 | Proximal transcriptional regulation |
| RAPGEF3 | Distal transcriptional regulation |
| SLC48A1 | Distal transcriptional regulation |
| HDAC7 | Distal transcriptional regulation |
| ENDOU | Distal transcriptional regulation |
| RPAP3 | Distal transcriptional regulation |
| ENSG00000257433 | Distal transcriptional regulation |
| ENSG00000257433 | RNA binding protein mediated regulation |
| ENDOU | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| YTHDF2 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014