SNP Report
Basic Infomation
| Name | rs1234820 dbSNP |
|---|---|
| Location | chr:12,48106488 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10875679 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs11609044 | 0.93[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11615078 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1233046 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1233047 | 0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1233052 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1233053 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1233055 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs12580458 | 0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2074535 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2524317 | 0.91[ASN][1000 genomes] |
| rs5006306 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs61917615 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs948392 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000257433 | Proximal transcriptional regulation |
| ENSG00000257433 | Distal transcriptional regulation |
| ENDOU | Distal transcriptional regulation |
| HDAC7 | Distal transcriptional regulation |
| ENSG00000257433 | RNA binding protein mediated regulation |
| ENDOU | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014