SNP Report
Basic Infomation
| Name | rs2453710 dbSNP |
|---|---|
| Location | chr:11,61406542 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897170 | 1.00[ASN][1000 genomes] |
| rs10897171 | 1.00[ASN][1000 genomes] |
| rs11230757 | 1.00[ASN][1000 genomes] |
| rs11230766 | 1.00[CHB][hapmap];0.80[MEX][hapmap] |
| rs11230767 | 1.00[CHB][hapmap];0.80[MEX][hapmap] |
| rs11820769 | 0.87[CHD][hapmap] |
| rs1692112 | 0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1692113 | 0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1692116 | 0.87[CHD][hapmap] |
| rs1692126 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];1.00[ASN][1000 genomes] |
| rs1812458 | 0.86[MEX][hapmap] |
| rs198749 | 0.87[CHD][hapmap] |
| rs198755 | 0.87[CHD][hapmap] |
| rs198756 | 0.87[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SYT7 | Distal transcriptional regulation |
| ENSG00000256591 | Distal transcriptional regulation |
| CPSF7 | Distal transcriptional regulation |
| SDHAF2 | Distal transcriptional regulation |
| ENSG00000240823 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014