SNP Report
Basic Infomation
| Name | rs11230766 dbSNP |
|---|---|
| Location | chr:11,61426582 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897170 | 0.80[EUR][1000 genomes] |
| rs10897172 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230757 | 0.80[EUR][1000 genomes] |
| rs11230764 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230767 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11820769 | 1.00[JPT][hapmap] |
| rs169167 | 1.00[JPT][hapmap] |
| rs1692116 | 1.00[JPT][hapmap] |
| rs1692126 | 0.91[CEU][hapmap];1.00[CHB][hapmap] |
| rs1812458 | 0.89[GIH][hapmap];0.93[MEX][hapmap] |
| rs198749 | 1.00[JPT][hapmap] |
| rs198750 | 1.00[JPT][hapmap] |
| rs198755 | 1.00[JPT][hapmap] |
| rs198756 | 1.00[JPT][hapmap] |
| rs2453710 | 1.00[CHB][hapmap];0.80[MEX][hapmap] |
| rs61898510 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000255947 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014