SNP Report
Basic Infomation
| Name | rs2275442 dbSNP |
|---|---|
| Location | chr:10,60035152 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10509088 | 1.00[CEU][hapmap];0.94[EUR][1000 genomes] |
| rs11006087 | 0.94[EUR][1000 genomes] |
| rs11006092 | 0.89[EUR][1000 genomes] |
| rs11006120 | 0.85[JPT][hapmap] |
| rs12241783 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12251970 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.94[EUR][1000 genomes] |
| rs12255735 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes] |
| rs12261547 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes] |
| rs12570088 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes] |
| rs12572236 | 0.94[EUR][1000 genomes] |
| rs12572520 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16912153 | 1.00[CEU][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap];0.92[EUR][1000 genomes] |
| rs2790176 | 1.00[ASN][1000 genomes] |
| rs3758567 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4948291 | 0.85[JPT][hapmap] |
| rs58375950 | 0.94[EUR][1000 genomes] |
| rs60679872 | 0.94[EUR][1000 genomes] |
| rs61873887 | 0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs61873953 | 0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs61875332 | 0.94[EUR][1000 genomes] |
| rs61875333 | 0.94[EUR][1000 genomes] |
| rs7900114 | 1.00[CEU][hapmap];0.89[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000180221 | Distal transcriptional regulation |
| CISD1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014