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rVarBase
SNP Report
Basic Infomation
Name
rs4948291  
dbSNP
Location
chr:10,60100089
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11006120
0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12241783
0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs12255735
0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16912153
0.90[CHD][hapmap]
rs2275442
0.85[JPT][hapmap]
rs3758567
0.80[ASN][1000 genomes]
rs59474782
0.89[ASN][1000 genomes]
rs61873953
0.92[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
UBE2D1
Distal transcriptional regulation
UBE2D1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)