SNP Report
Name | rs2266959   dbSNP |
---|---|
Location | chr:22,21922904 |
Allele | G/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1034329 | 1.00[CEU][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs11089620 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11089629 | 1.00[CEU][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes] |
rs11089637 | 0.84[CEU][hapmap] |
rs12158299 | 1.00[CEU][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs12168746 | 0.84[AFR][1000 genomes] |
rs12168958 | 0.84[AMR][1000 genomes] |
rs12169001 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs12484550 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs131656 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
rs131657 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs131658 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs131659 | 0.81[EUR][1000 genomes] |
rs131660 | 0.84[EUR][1000 genomes] |
rs131664 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs131665 | 1.00[CEU][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs140488 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs140489 | 1.00[CEU][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes] |
rs140490 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs140491 | 1.00[CEU][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs140492 | 1.00[CEU][hapmap];0.90[TSI][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs140498 | 1.00[CEU][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs140499 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs1811069 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs181359 | 1.00[CEU][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs181360 | 1.00[CEU][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs181361 | 0.89[EUR][1000 genomes] |
rs181363 | 0.80[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs181366 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs2070512 | 1.00[CEU][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes] |
rs2256609 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2266961 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2266963 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2266964 | 0.85[EUR][1000 genomes] |
rs2283789 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs2283790 | 1.00[CEU][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs2298428 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2298429 | 1.00[CEU][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes] |
rs2876971 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs4820091 | 0.84[CEU][hapmap];0.84[EUR][1000 genomes] |
rs4821104 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4821108 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs4821112 | 1.00[CEU][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs4821114 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4821116 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4821124 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4821130 | 0.92[CEU][hapmap];0.90[TSI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs5749485 | 0.87[EUR][1000 genomes] |
rs5749493 | 0.87[EUR][1000 genomes] |
rs5749495 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs5749502 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs5754166 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs5754177 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs5754217 | 1.00[CEU][hapmap];0.90[TSI][hapmap];0.87[EUR][1000 genomes] |
rs5754234 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs5754238 | 0.87[EUR][1000 genomes] |
rs5754295 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs5754323 | 0.85[EUR][1000 genomes] |
rs5754344 | 0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs5754352 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs5754387 | 1.00[CEU][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap] |
rs5754422 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs5754426 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs5754467 | 0.92[CEU][hapmap];0.92[MEX][hapmap] |
rs59391722 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs5994638 | 0.85[EUR][1000 genomes] |
rs5998509 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs5998576 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs5998599 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs5998619 | 1.00[CEU][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs5998644 | 0.85[EUR][1000 genomes] |
rs5998672 | 1.00[CEU][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes] |
rs66534072 | 0.89[EUR][1000 genomes] |
rs73166619 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs73166622 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rs73166630 | 0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs73166632 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs738127 | 1.00[CEU][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs738128 | 0.80[EUR][1000 genomes] |
rs7444 | 1.00[CEU][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes] |
rs7445 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs8137950 | 0.81[EUR][1000 genomes] |
rs8139079 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs8139142 | 0.94[GIH][hapmap];0.86[JPT][hapmap] |
rs878825 | 1.00[CEU][hapmap];0.90[TSI][hapmap];0.85[EUR][1000 genomes] |
rs9619386 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs9621715 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
ENSG00000259456 | Distal transcriptional regulation |
ADNP | Distal transcriptional regulation |
TOP3B | Distal transcriptional regulation |
PPIL2 | Distal transcriptional regulation |
MIR301B | Distal transcriptional regulation |
MIR130B | Distal transcriptional regulation |
YDJC | Distal transcriptional regulation |
CCDC116 | Distal transcriptional regulation |
ENSG00000227634 | Distal transcriptional regulation |
SDF2L1 | Distal transcriptional regulation |
UBE2L3 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014