SNP Report
Basic Infomation
| Name | rs11089637 dbSNP |
|---|---|
| Location | chr:22,21979096 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 75)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1034329 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11089629 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];0.84[MEX][hapmap];0.97[MKK][hapmap];0.90[TSI][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12158299 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12169001 | 0.84[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12484550 | 0.84[CEU][hapmap] |
| rs131656 | 0.92[ASN][1000 genomes] |
| rs131657 | 0.83[ASN][1000 genomes] |
| rs131658 | 0.85[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs131659 | 0.80[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs131660 | 0.82[ASN][1000 genomes] |
| rs131664 | 0.94[ASN][1000 genomes] |
| rs131665 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.94[ASN][1000 genomes] |
| rs140488 | 0.94[ASN][1000 genomes] |
| rs140489 | 1.00[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs140490 | 0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs140491 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.94[ASN][1000 genomes] |
| rs140492 | 1.00[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs140496 | 0.90[ASN][1000 genomes] |
| rs140498 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.94[ASN][1000 genomes] |
| rs140499 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs1811069 | 0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs181359 | 0.84[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.94[ASN][1000 genomes] |
| rs181360 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.94[ASN][1000 genomes] |
| rs181363 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs181366 | 0.94[ASN][1000 genomes] |
| rs2070512 | 1.00[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2266959 | 0.84[CEU][hapmap] |
| rs2266961 | 0.84[CEU][hapmap] |
| rs2266963 | 0.84[CEU][hapmap] |
| rs2266964 | 0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2283789 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2283790 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2298428 | 0.84[CEU][hapmap] |
| rs2298429 | 0.89[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.87[LWK][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2876971 | 0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3747093 | 0.97[ASN][1000 genomes] |
| rs4820091 | 1.00[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4821108 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4821112 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4821116 | 0.84[CEU][hapmap] |
| rs4821124 | 0.84[CEU][hapmap] |
| rs4821130 | 1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs5749485 | 0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs5749493 | 0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs5749502 | 0.84[CEU][hapmap] |
| rs5754217 | 1.00[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs5754238 | 0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs5754295 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs5754323 | 0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs5754352 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs5754387 | 0.84[CEU][hapmap];0.95[GIH][hapmap];0.90[TSI][hapmap] |
| rs5754422 | 0.83[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs5754426 | 0.83[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs5754467 | 0.91[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs5994638 | 0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs5998576 | 0.81[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs5998599 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs5998619 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs5998644 | 0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs5998672 | 1.00[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs66534072 | 0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs710177 | 0.94[ASN][1000 genomes] |
| rs73166622 | 0.94[ASN][1000 genomes] |
| rs73166632 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs738127 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs738128 | 0.80[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs738129 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs7444 | 0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7445 | 0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8137950 | 0.81[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs8139079 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs861857 | 0.91[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs878825 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9619386 | 0.83[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9621715 | 0.91[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MIR17HG | Distal transcriptional regulation |
| ENSG00000200997 | Distal transcriptional regulation |
| THAP7-AS1 | Distal transcriptional regulation |
| THAP7 | Distal transcriptional regulation |
| UBE2L3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014