SNP Report
Basic Infomation
| Name | rs2074230 dbSNP |
|---|---|
| Location | chr:11,60783804 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1050922 | 0.86[JPT][hapmap] |
| rs11230559 | 1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11230560 | 0.83[EUR][1000 genomes] |
| rs11230562 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11230564 | 1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs11230565 | 1.00[AMR][1000 genomes] |
| rs11230566 | 1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12790976 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs12791045 | 0.85[EUR][1000 genomes] |
| rs12797044 | 0.85[EUR][1000 genomes] |
| rs12808046 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17752099 | 0.93[CEU][hapmap] |
| rs17824933 | 0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2074223 | 0.81[AMR][1000 genomes] |
| rs2074224 | 0.81[AMR][1000 genomes] |
| rs2074229 | 0.86[JPT][hapmap] |
| rs2074233 | 1.00[ASW][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];0.86[MEX][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs71488497 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs916813 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs929230 | 1.00[ASW][hapmap];0.93[CEU][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CD6 | Proximal transcriptional regulation |
| CD6 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014