SNP Report
Basic Infomation
| Name | rs2074233 dbSNP |
|---|---|
| Location | chr:11,60785464 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11230559 | 1.00[ASW][hapmap];0.87[GIH][hapmap];0.86[MEX][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11230560 | 0.86[EUR][1000 genomes] |
| rs11230562 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11230564 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11230565 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11230566 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12790976 | 0.91[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs12791045 | 0.81[EUR][1000 genomes] |
| rs12797044 | 0.81[EUR][1000 genomes] |
| rs12808046 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17824933 | 0.91[AMR][1000 genomes] |
| rs2074223 | 0.81[AMR][1000 genomes] |
| rs2074224 | 0.81[AMR][1000 genomes] |
| rs2074230 | 1.00[ASW][hapmap];0.89[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];0.86[MEX][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs71488497 | 0.89[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs916813 | 0.91[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs929230 | 1.00[ASW][hapmap];0.94[GIH][hapmap];0.86[MEX][hapmap];0.91[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CD6 | Proximal transcriptional regulation |
| CD6 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014