SNP Report
Basic Infomation
| Name | rs1935029 dbSNP |
|---|---|
| Location | chr:10,93538757 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10509634 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10786014 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10881958 | 0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10881960 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10881966 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10881967 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10881969 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs10881971 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs12782935 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1341263 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1592050 | 0.98[ASN][1000 genomes] |
| rs2066275 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2153654 | 0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2901505 | 0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7897499 | 0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000228701 | Distal transcriptional regulation |
| TNKS2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014