SNP Report
Basic Infomation
| Name | rs1341263 dbSNP |
|---|---|
| Location | chr:10,93556855 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10509634 | 1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs10509636 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes] |
| rs10786014 | 1.00[CEU][hapmap];0.91[GIH][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs10881958 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs10881960 | 0.80[EUR][1000 genomes] |
| rs10881966 | 1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs10881967 | 1.00[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs10881969 | 0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10881971 | 1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10881989 | 0.90[CHB][hapmap];0.91[JPT][hapmap] |
| rs11186697 | 0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12221087 | 0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12412538 | 0.84[AFR][1000 genomes];0.81[EUR][1000 genomes] |
| rs12782935 | 0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1417254 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1539040 | 0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1592050 | 0.83[GIH][hapmap] |
| rs1935029 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs2066275 | 1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2153654 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2901505 | 0.88[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs3758499 | 1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes] |
| rs7082350 | 0.84[AFR][1000 genomes];0.81[EUR][1000 genomes] |
| rs7897499 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7913999 | 0.84[AFR][1000 genomes];0.81[EUR][1000 genomes] |
| rs7919141 | 0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TNKS2 | Proximal transcriptional regulation |
| ENSG00000228759 | Distal transcriptional regulation |
| SRP9P1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014