SNP Report

Basic Infomation

Name	rs1893902 dbSNP
Location	chr:11,58190747
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 53)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10896760	0.93[ASN][1000 genomes]
rs10896761	0.93[ASN][1000 genomes]
rs10896771	0.95[ASN][1000 genomes]
rs10896772	0.95[ASN][1000 genomes]
rs10896794	0.83[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes]
rs10896795	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs11229304	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11229305	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs11229409	1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs11229410	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs11229411	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs11229412	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs11229413	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs11229414	0.95[ASN][1000 genomes]
rs11229415	0.95[ASN][1000 genomes]
rs11229463	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11229505	0.83[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes]
rs11229519	0.83[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes]
rs11229543	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs11229545	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs11601687	0.87[AMR][1000 genomes]
rs11605269	0.87[AMR][1000 genomes]
rs11605297	0.83[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes]
rs11605683	0.83[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes]
rs12271646	0.95[ASN][1000 genomes]
rs12279895	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs12280114	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12285111	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12575804	0.95[ASN][1000 genomes]
rs12800710	0.83[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes]
rs17474373	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17567523	0.87[AMR][1000 genomes]
rs1938637	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs1986404	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2000486	0.92[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs2186407	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2275993	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs3168135	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs35279927	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4127353	1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4323891	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs4367960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4579945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6591475	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7101864	0.92[CHB][hapmap];0.93[JPT][hapmap]
rs7102510	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs7102852	0.87[AMR][1000 genomes]
rs7110210	0.87[AMR][1000 genomes]
rs7112318	0.84[ASN][1000 genomes]
rs7926741	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7930778	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs7931394	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8373	0.84[CHB][hapmap];0.93[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
OR5B2	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)