SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 19)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11229305	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11229409	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11229410	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs11229411	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs11229412	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs11229413	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs12275874	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12279895	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs12280114	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs1893902	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1938637	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs1986404	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2000486	0.89[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs4127353	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs4323891	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs6591475	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs7101864	0.88[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs7120081	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7930778	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
OR10Q1	Proximal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)