SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 12)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10483817	0.94[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10483818	0.89[YRI][hapmap]
rs12433279	0.90[YRI][hapmap]
rs12435141	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs12435831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12437314	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12890882	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs4902627	0.90[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7141529	0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7350738	0.97[ASN][1000 genomes]
rs8006682	0.90[CEU][hapmap];0.93[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8016988	0.94[CEU][hapmap];0.90[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000259038	Distal transcriptional regulation
ZFP36L1	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)