SNP Report
Basic Infomation
| Name | rs17577 dbSNP |
|---|---|
| Location | chr:20,44643111 |
| Allele | G/A/C |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10432735 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11908352 | 1.00[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13925 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1888235 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2236416 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2274755 | 0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3918241 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs3918242 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3918261 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3918270 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3918271 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6065912 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs6073984 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6124764 | 1.00[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6124765 | 0.84[ASN][1000 genomes] |
| rs62215576 | 1.00[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs66553311 | 0.84[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000203346 | Proximal transcriptional regulation |
| ENSG00000229957 | Distal transcriptional regulation |
| MMP9 | Distal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| SLC12A5 | Distal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| ENSG00000240742 | Distal transcriptional regulation |
| ENSG00000204044 | RNA binding protein mediated regulation |
| MMP9 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014