SNP Report
Name | rs3918271   dbSNP |
---|---|
Location | chr:20,44645593 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10432735 | 0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs11908352 | 1.00[AFR][1000 genomes];0.92[ASN][1000 genomes] |
rs13925 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17577 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1888235 | 0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs2236416 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2274755 | 0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs3918241 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs3918242 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs3918261 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3918270 | 0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6073984 | 0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs6124764 | 1.00[AFR][1000 genomes];0.92[ASN][1000 genomes] |
rs6124765 | 0.84[ASN][1000 genomes] |
rs62215576 | 1.00[AFR][1000 genomes];0.98[ASN][1000 genomes] |
rs66553311 | 0.82[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
SLC12A5 | Proximal transcriptional regulation |
ENSG00000240742 | Proximal transcriptional regulation |
ZNF335 | Distal transcriptional regulation |
SLC12A5 | Distal transcriptional regulation |
ENSG00000204044 | Distal transcriptional regulation |
ENSG00000240742 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014