SNP Report
Basic Infomation
| Name | rs6065912 dbSNP |
|---|---|
| Location | chr:20,44632367 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13925 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs17577 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1888235 | 1.00[CEU][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2236416 | 0.94[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2274755 | 0.94[CEU][hapmap];0.83[MEX][hapmap];0.91[TSI][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs3746513 | 0.81[JPT][hapmap] |
| rs3827066 | 0.81[JPT][hapmap] |
| rs3918241 | 0.94[CEU][hapmap];0.88[YRI][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs3918242 | 0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs3918261 | 0.94[CEU][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs3918270 | 0.94[CEU][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs6073984 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7270354 | 0.81[JPT][hapmap] |
| rs8123864 | 0.81[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MMP9 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014