SNP Report
Basic Infomation
| Name | rs17490872 dbSNP |
|---|---|
| Location | chr:12,40659907 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11564150 | 0.85[AFR][1000 genomes] |
| rs1529376 | 1.00[AMR][1000 genomes] |
| rs17466178 | 0.85[AFR][1000 genomes] |
| rs17490796 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17491082 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17491410 | 1.00[AMR][1000 genomes] |
| rs17491473 | 1.00[AMR][1000 genomes] |
| rs17491673 | 1.00[AMR][1000 genomes] |
| rs17519825 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17520445 | 1.00[AMR][1000 genomes] |
| rs17520459 | 1.00[AMR][1000 genomes] |
| rs17520606 | 1.00[AMR][1000 genomes] |
| rs2708444 | 1.00[AMR][1000 genomes] |
| rs2723262 | 1.00[AMR][1000 genomes] |
| rs2723272 | 1.00[AMR][1000 genomes] |
| rs73102746 | 0.85[AFR][1000 genomes] |
| rs7975730 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014