SNP Report
Basic Infomation
| Name | rs17489985 dbSNP |
|---|---|
| Location | chr:12,40541456 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10747959 | 1.00[ASN][1000 genomes] |
| rs10784283 | 1.00[ASN][1000 genomes] |
| rs11564120 | 1.00[ASN][1000 genomes] |
| rs11564122 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11564226 | 1.00[ASN][1000 genomes] |
| rs12099949 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1497046 | 1.00[ASN][1000 genomes] |
| rs1497048 | 1.00[ASN][1000 genomes] |
| rs1566127 | 1.00[ASN][1000 genomes] |
| rs17442665 | 0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17458341 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17458780 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17458836 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17458974 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2132745 | 1.00[ASN][1000 genomes] |
| rs2132746 | 1.00[ASN][1000 genomes] |
| rs2404351 | 1.00[ASN][1000 genomes] |
| rs28370599 | 1.00[ASN][1000 genomes] |
| rs2952711 | 0.86[EUR][1000 genomes] |
| rs34714539 | 1.00[ASN][1000 genomes] |
| rs35985096 | 1.00[ASN][1000 genomes] |
| rs4768196 | 1.00[ASN][1000 genomes] |
| rs4768202 | 1.00[ASN][1000 genomes] |
| rs6581438 | 1.00[ASN][1000 genomes] |
| rs6581439 | 1.00[ASN][1000 genomes] |
| rs7135678 | 0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7138075 | 1.00[ASN][1000 genomes] |
| rs7138078 | 1.00[ASN][1000 genomes] |
| rs71449744 | 1.00[ASN][1000 genomes] |
| rs7305155 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs74088117 | 1.00[ASN][1000 genomes] |
| rs937385 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000260943 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014