SNP Report

Basic Infomation

Name	rs17458780 dbSNP
Location	chr:12,40541443
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 37)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10747959	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10784283	1.00[ASN][1000 genomes]
rs11564120	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11564122	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11564226	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12099949	0.85[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1497046	1.00[ASN][1000 genomes]
rs1497048	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1566127	1.00[ASN][1000 genomes]
rs17442665	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17442742	1.00[YRI][hapmap]
rs17442749	1.00[YRI][hapmap]
rs17442756	1.00[YRI][hapmap]
rs17458341	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17458836	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17458974	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17489985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132745	1.00[ASN][1000 genomes]
rs2132746	1.00[ASN][1000 genomes]
rs2404351	1.00[ASN][1000 genomes]
rs28370599	1.00[ASN][1000 genomes]
rs2952711	0.86[EUR][1000 genomes]
rs34714539	1.00[ASN][1000 genomes]
rs35985096	1.00[ASN][1000 genomes]
rs4768196	1.00[ASN][1000 genomes]
rs4768202	1.00[ASN][1000 genomes]
rs6581438	1.00[ASN][1000 genomes]
rs6581439	1.00[ASN][1000 genomes]
rs7135678	0.85[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7138075	1.00[ASN][1000 genomes]
rs7138078	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs71449744	1.00[ASN][1000 genomes]
rs7305155	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7306718	0.85[YRI][hapmap]
rs74088117	1.00[ASN][1000 genomes]
rs7484475	0.85[YRI][hapmap]
rs937385	1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000260943	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)