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rVarBase
SNP Report
Basic Infomation
Name
rs17349892  
dbSNP
Location
chr:20,30624565
Allele
G/T
LD-proxy of rSNPs(r
2
>0.8) (count: 8)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11699606
0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6058522
0.86[CEU][hapmap];0.81[TSI][hapmap]
rs6087810
0.91[LWK][hapmap]
rs6121325
0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6579313
0.82[AFR][1000 genomes]
rs6579316
1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6579317
1.00[ASW][hapmap];0.93[CEU][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8119189
0.91[LWK][hapmap]
rSNP related genes
Symbol
Regulation type
ENSG00000226239
Distal transcriptional regulation
MYLK2
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
eQTL related gene
Source
PLAGL2
SCAN
C20orf160
SCAN