SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 8)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11699606	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6058522	0.86[CEU][hapmap];0.81[TSI][hapmap]
rs6087810	0.91[LWK][hapmap]
rs6121325	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6579313	0.82[AFR][1000 genomes]
rs6579316	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6579317	1.00[ASW][hapmap];0.93[CEU][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8119189	0.91[LWK][hapmap]

rSNP related genes

Symbol	Regulation type
ENSG00000226239	Distal transcriptional regulation
MYLK2	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
PLAGL2	SCAN
C20orf160	SCAN