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rVarBase
SNP Report
Basic Infomation
Name
rs8119189  
dbSNP
Location
chr:20,30594699
Allele
C/A
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs17349892
0.91[LWK][hapmap]
rs6087810
1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6087811
1.00[EUR][1000 genomes]
rs6579313
0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6579316
0.91[LWK][hapmap]
rs6579317
0.87[LWK][hapmap]
rs8115026
0.81[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
CCM2L
Proximal transcriptional regulation
RNA5SP481
Proximal transcriptional regulation
CCM2L
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
LOC100128909
SCAN