SNP Report
Name | rs1734907   dbSNP |
---|---|
Location | chr:7,100315517 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10247962 | 0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap] |
rs1052897 | 0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap] |
rs12673102 | 0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap] |
rs221770 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs221774 | 1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs221780 | 0.89[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs221783 | 1.00[ASN][1000 genomes] |
rs221784 | 0.89[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs221786 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
rs221789 | 0.80[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs221792 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs221794 | 0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs221796 | 0.85[ASN][1000 genomes] |
rs221797 | 1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs221798 | 1.00[ASN][1000 genomes] |
rs221800 | 1.00[ASN][1000 genomes] |
rs221803 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
rs2432929 | 1.00[ASN][1000 genomes] |
rs3757859 | 1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap] |
rs4727457 | 0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap] |
rs4727462 | 0.93[ASN][1000 genomes] |
rs4729598 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
rs4729600 | 0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap] |
rs492430 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs506597 | 0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MKK][hapmap];1.00[ASN][1000 genomes] |
rs534043 | 0.97[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs564449 | 0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
rs6975957 | 0.81[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap] |
rs7457868 | 0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap] |
Symbol | Regulation type |
---|---|
EPO | Proximal transcriptional regulation |
POP7 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014