SNP Report
Basic Infomation
| Name | rs4727457 dbSNP |
|---|---|
| Location | chr:7,100236593 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10247962 | 0.93[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1052897 | 0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12673102 | 0.93[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs1734907 | 0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap] |
| rs221770 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs221774 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs221780 | 0.86[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap] |
| rs221784 | 0.86[CEU][hapmap];0.85[CHB][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap] |
| rs221786 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs221789 | 0.80[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap] |
| rs221794 | 0.86[CEU][hapmap] |
| rs221797 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs221803 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs3757859 | 0.93[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4729596 | 0.83[EUR][1000 genomes] |
| rs4729598 | 1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs4729600 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4988606 | 0.82[EUR][1000 genomes] |
| rs506597 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
| rs564449 | 1.00[JPT][hapmap] |
| rs6975957 | 1.00[JPT][hapmap] |
| rs7457868 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MOSPD3 | Distal transcriptional regulation |
| TFR2 | Distal transcriptional regulation |
| GNB2 | Distal transcriptional regulation |
| ACTL6B | Distal transcriptional regulation |
| TFR2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014