SNP Report
Basic Infomation
| Name | rs221783 dbSNP |
|---|---|
| Location | chr:7,100292914 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1052897 | 1.00[AFR][1000 genomes] |
| rs1734907 | 1.00[ASN][1000 genomes] |
| rs221770 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs221774 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs221778 | 0.82[EUR][1000 genomes] |
| rs221780 | 0.93[ASN][1000 genomes] |
| rs221781 | 0.82[AMR][1000 genomes] |
| rs221784 | 1.00[ASN][1000 genomes] |
| rs221786 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs221789 | 0.87[ASN][1000 genomes] |
| rs221792 | 1.00[ASN][1000 genomes] |
| rs221794 | 0.96[ASN][1000 genomes] |
| rs221796 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs221797 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs221798 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs221800 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs221803 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2432929 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4727462 | 0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs492430 | 1.00[ASN][1000 genomes] |
| rs506597 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs534043 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs564449 | 0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZCWPW1 | Distal transcriptional regulation |
| MEPCE | Distal transcriptional regulation |
| PCOLCE | Distal transcriptional regulation |
| PCOLCE-AS1 | Distal transcriptional regulation |
| POP7 | Distal transcriptional regulation |
| LRCH4 | Distal transcriptional regulation |
| FBXO24 | Distal transcriptional regulation |
| EPHB4 | Distal transcriptional regulation |
| MOSPD3 | Distal transcriptional regulation |
| EPO | Distal transcriptional regulation |
| SLC12A9 | Distal transcriptional regulation |
| SRRT | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014