SNP Report
Basic Infomation
| Name | rs17107472 dbSNP |
|---|---|
| Location | chr:10,93951793 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10882019 | 1.00[JPT][hapmap] |
| rs1104012 | 1.00[JPT][hapmap] |
| rs11592691 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes] |
| rs11594722 | 0.85[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11595822 | 0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11817194 | 0.84[JPT][hapmap] |
| rs12256118 | 1.00[JPT][hapmap] |
| rs17107539 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes] |
| rs1711850 | 1.00[JPT][hapmap] |
| rs1935864 | 1.00[CEU][hapmap];0.84[CHB][hapmap];0.86[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap] |
| rs2048901 | 0.84[JPT][hapmap] |
| rs2149631 | 0.80[AMR][1000 genomes] |
| rs55737168 | 0.80[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6583801 | 1.00[JPT][hapmap] |
| rs7070076 | 0.84[JPT][hapmap] |
| rs833364 | 1.00[JPT][hapmap] |
| rs833365 | 1.00[JPT][hapmap] |
| rs833368 | 0.84[JPT][hapmap] |
| rs833380 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CPEB3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014