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rVarBase
SNP Report
Basic Infomation
Name
rs16847613  
dbSNP
Location
chr:1,201033720
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 3)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs12565884
0.86[YRI][hapmap]
rs2297904
1.00[CEU][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs55922503
0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
ASCL5
Distal transcriptional regulation
CACNA1S
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
eQTL related gene
Source
LOC541473
SCAN
PPIA
SCAN