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rVarBase
SNP Report
Basic Infomation
Name
rs12565884  
dbSNP
Location
chr:1,201034272
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10920103
1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12046840
1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12048771
1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12403523
1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12406017
0.97[ASN][1000 genomes]
rs12565866
0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16847613
0.86[YRI][hapmap]
rs3767505
0.91[YRI][hapmap]
rs61614423
0.97[ASN][1000 genomes]
rs7556265
1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
ASCL5
Distal transcriptional regulation
CACNA1S
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)