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rVarBase
SNP Report
Basic Infomation
Name
rs1540698  
dbSNP
Location
chr:12,40350436
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11174359
1.00[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes]
rs11174453
0.86[EUR][1000 genomes]
rs11564119
0.85[EUR][1000 genomes]
rs12301617
0.84[EUR][1000 genomes]
rs1390952
0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2404350
1.00[CEU][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes]
rs2896824
0.86[EUR][1000 genomes]
rs4491317
0.86[EUR][1000 genomes]
rs481241
0.91[CEU][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
LRRK2
Distal transcriptional regulation
SLC2A13
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)