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rVarBase
SNP Report
Basic Infomation
Name
rs1390952  
dbSNP
Location
chr:12,40349503
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1005955
0.81[CEU][hapmap];0.81[TSI][hapmap]
rs11174359
0.85[JPT][hapmap]
rs1540698
0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1908912
0.81[CEU][hapmap];0.81[TSI][hapmap]
rs2404350
0.85[JPT][hapmap]
rs4768201
0.86[EUR][1000 genomes]
rs481241
0.90[JPT][hapmap]
rSNP related genes
Symbol
Regulation type
SLC2A13
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)