SNP Report
Basic Infomation
| Name | rs12810487 dbSNP |
|---|---|
| Location | chr:12,48159571 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12422983 | 0.84[TSI][hapmap];0.84[AMR][1000 genomes] |
| rs12423645 | 1.00[JPT][hapmap];0.84[AMR][1000 genomes] |
| rs12424297 | 0.84[AMR][1000 genomes] |
| rs12426774 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12815308 | 1.00[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs12815462 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12817548 | 0.83[AMR][1000 genomes] |
| rs12818212 | 1.00[CHB][hapmap];0.83[AMR][1000 genomes] |
| rs12818241 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12818990 | 0.81[ASN][1000 genomes] |
| rs12825831 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12831651 | 0.93[EUR][1000 genomes] |
| rs2283345 | 0.85[CEU][hapmap] |
| rs4340112 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAPGEF3 | Distal transcriptional regulation |
| SLC48A1 | Distal transcriptional regulation |
| HDAC7 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014