SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 8)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12423645	1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12424297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12426774	0.84[TSI][hapmap];0.85[AMR][1000 genomes]
rs12810487	0.84[TSI][hapmap];0.84[AMR][1000 genomes]
rs12815462	0.84[AMR][1000 genomes]
rs12817548	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12818212	0.91[CEU][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12818241	0.84[TSI][hapmap];0.85[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
RAPGEF3	Proximal transcriptional regulation
SLC48A1	Distal transcriptional regulation
RAPGEF3	Distal transcriptional regulation
HDAC7	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)