SNP Report
Basic Infomation
| Name | rs12722559 dbSNP |
|---|---|
| Location | chr:10,6070273 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11256416 | 0.84[ASN][1000 genomes] |
| rs11597237 | 0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12722489 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs12722515 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12722523 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12722527 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12722551 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12722553 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12722561 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12722574 | 0.91[ASN][1000 genomes] |
| rs12722587 | 0.91[ASN][1000 genomes] |
| rs12722588 | 0.91[ASN][1000 genomes] |
| rs17147986 | 0.96[AMR][1000 genomes] |
| rs2246031 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs41294671 | 0.96[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs41294713 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4625363 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4747837 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7093069 | 0.91[ASN][1000 genomes] |
| rs7900385 | 0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7900744 | 0.91[ASN][1000 genomes] |
| rs791590 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL2RA | Proximal transcriptional regulation |
| IL15RA | Distal transcriptional regulation |
| ENSG00000229664 | RNA binding protein mediated regulation |
| IL2RA | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014