SNP Report
Name | rs12722515   dbSNP |
---|---|
Location | chr:10,6081230 |
Allele | C/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11597237 | 0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs12722489 | 0.93[CEU][hapmap];0.82[CHD][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs12722523 | 0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs12722527 | 0.87[CEU][hapmap];0.82[CHB][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs12722551 | 0.94[EUR][1000 genomes] |
rs12722553 | 0.81[CEU][hapmap];0.81[CHB][hapmap];0.91[TSI][hapmap];0.94[EUR][1000 genomes] |
rs12722559 | 0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rs12722561 | 0.87[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes] |
rs17147986 | 0.81[CEU][hapmap];0.90[CHB][hapmap] |
rs2104286 | 0.82[CHD][hapmap];0.92[JPT][hapmap] |
rs2246031 | 1.00[ASW][hapmap];0.93[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs3118475 | 0.82[AMR][1000 genomes] |
rs41294713 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4625363 | 0.96[EUR][1000 genomes] |
rs4747837 | 0.82[EUR][1000 genomes] |
rs7900385 | 0.84[EUR][1000 genomes] |
rs791590 | 0.93[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
ENSG00000214015 | Distal transcriptional regulation |
IL2RA | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014