SNP Report
Basic Infomation
| Name | rs12321116 dbSNP |
|---|---|
| Location | chr:12,49568067 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10083069 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10160974 | 0.93[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11168871 | 1.00[CEU][hapmap] |
| rs11168879 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12299500 | 0.93[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12302803 | 1.00[TSI][hapmap] |
| rs12303622 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12305752 | 1.00[AMR][1000 genomes] |
| rs12308393 | 0.93[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12310528 | 1.00[TSI][hapmap] |
| rs12315499 | 0.93[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12317546 | 0.93[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12318545 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61730859 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7342336 | 1.00[AMR][1000 genomes] |
| rs9804862 | 1.00[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000258017 | Distal transcriptional regulation |
| TUBA1B | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| FNBP4 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014