SNP Report
Basic Infomation
| Name | rs12259284 dbSNP |
|---|---|
| Location | chr:10,81687408 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10887226 | 0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs12247735 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12247741 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12261336 | 0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12261337 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs17878456 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17884887 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2181205 | 0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes] |
| rs2341951 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3750876 | 0.92[ASN][1000 genomes] |
| rs3793925 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4369337 | 0.85[YRI][hapmap] |
| rs726288 | 0.94[CHB][hapmap];0.81[AMR][1000 genomes] |
| rs7911085 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs911886 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MBL1P | Proximal transcriptional regulation |
| MBL1P | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014