SNP Report
Basic Infomation
| Name | rs12204886 dbSNP |
|---|---|
| Location | chr:6,91000944 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12205059 | 1.00[CEU][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.97[EUR][1000 genomes] |
| rs12206126 | 1.00[CEU][hapmap];0.97[EUR][1000 genomes] |
| rs12209242 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12212193 | 0.81[YRI][hapmap] |
| rs166953 | 1.00[CEU][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes] |
| rs2174281 | 0.85[ASW][hapmap];0.89[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs2501717 | 0.90[EUR][1000 genomes] |
| rs45483891 | 0.88[EUR][1000 genomes] |
| rs60724777 | 0.86[EUR][1000 genomes] |
| rs62408209 | 0.88[EUR][1000 genomes] |
| rs62408214 | 0.88[EUR][1000 genomes] |
| rs62408219 | 0.97[EUR][1000 genomes] |
| rs73507242 | 0.97[EUR][1000 genomes] |
| rs7742121 | 1.00[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7756574 | 1.00[CEU][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7771689 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BACH2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| DPP7 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014