SNP Report
Basic Infomation
| Name | rs62408209 dbSNP |
|---|---|
| Location | chr:6,90895961 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12191715 | 1.00[ASN][1000 genomes] |
| rs12204886 | 0.88[EUR][1000 genomes] |
| rs12205059 | 0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12206126 | 0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12209242 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12210177 | 1.00[ASN][1000 genomes] |
| rs166953 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2501717 | 1.00[ASN][1000 genomes] |
| rs45483891 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60724777 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62408214 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62408219 | 0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72923945 | 1.00[ASN][1000 genomes] |
| rs73505258 | 0.82[AFR][1000 genomes] |
| rs73507242 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7742121 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7756574 | 0.88[EUR][1000 genomes] |
| rs7771689 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BACH2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014