SNP Report
Basic Infomation
| Name | rs11755527 dbSNP |
|---|---|
| Location | chr:6,90958231 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10498965 | 0.84[CHD][hapmap] |
| rs12174872 | 0.86[ASN][1000 genomes] |
| rs2325261 | 0.91[ASN][1000 genomes] |
| rs3757247 | 1.00[ASW][hapmap];0.89[CEU][hapmap];0.80[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];0.87[MEX][hapmap];0.98[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs41506844 | 0.84[CHD][hapmap] |
| rs56212747 | 0.92[ASN][1000 genomes] |
| rs58443172 | 0.91[ASN][1000 genomes] |
| rs72928023 | 0.81[ASN][1000 genomes] |
| rs72928026 | 0.81[ASN][1000 genomes] |
| rs7752558 | 0.84[CHD][hapmap] |
| rs7754251 | 0.93[ASN][1000 genomes] |
| rs7761522 | 0.84[CHD][hapmap] |
| rs9344992 | 1.00[CHB][hapmap];0.84[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs9344993 | 0.87[ASN][1000 genomes] |
| rs9344995 | 0.90[ASN][1000 genomes] |
| rs9344996 | 0.82[CHD][hapmap] |
| rs9351236 | 0.84[CHD][hapmap];0.82[ASN][1000 genomes] |
| rs943689 | 0.82[YRI][hapmap] |
| rs953233 | 0.84[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BACH2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| SPINK2 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014