SNP Report
Basic Infomation
| Name | rs58443172 dbSNP |
|---|---|
| Location | chr:6,90918796 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1018525 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs10498965 | 0.93[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11755527 | 0.91[ASN][1000 genomes] |
| rs12055566 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12174872 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2325261 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs41506844 | 0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs55719595 | 0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs55817481 | 0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs56212747 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs72928017 | 0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs72928023 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72928026 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7754251 | 0.89[ASN][1000 genomes] |
| rs7761522 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9344992 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9344993 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9344995 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9344996 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9344999 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs9351236 | 0.95[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs9353715 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs953233 | 0.93[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BACH2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014