SNP Report
Basic Infomation
| Name | rs11661553 dbSNP |
|---|---|
| Location | chr:18,67544637 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1007822 | 0.85[LWK][hapmap];0.81[AFR][1000 genomes] |
| rs11151544 | 0.88[AFR][1000 genomes];0.81[EUR][1000 genomes] |
| rs11151545 | 0.80[AFR][1000 genomes] |
| rs11151547 | 1.00[YRI][hapmap] |
| rs12969613 | 0.80[AFR][1000 genomes] |
| rs12969657 | 1.00[ASW][hapmap];0.83[JPT][hapmap];0.88[AFR][1000 genomes] |
| rs1539964 | 1.00[YRI][hapmap] |
| rs1610555 | 0.91[CHB][hapmap] |
| rs17207042 | 0.88[AFR][1000 genomes] |
| rs1788097 | 0.95[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs1788098 | 0.95[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs1788100 | 0.87[JPT][hapmap] |
| rs1788103 | 0.87[JPT][hapmap] |
| rs1790588 | 0.87[JPT][hapmap] |
| rs1865761 | 0.87[JPT][hapmap];0.88[AFR][1000 genomes] |
| rs4094864 | 0.96[AFR][1000 genomes];0.81[EUR][1000 genomes] |
| rs763361 | 0.82[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CD226 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014