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rVarBase
SNP Report
Basic Infomation
Name
rs1539964
dbSNP
Location
chr:18,67625285
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 2)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11151547
1.00[ASW][hapmap];0.88[CEU][hapmap];0.90[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];0.86[JPT][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11661553
1.00[YRI][hapmap]
rSNP related genes
Symbol
Regulation type
CD226
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
eQTL related gene
Source
FUBP1
SCAN
TNS1
SCAN