SNP Report

Basic Infomation

Name	rs11656036 dbSNP
Location	chr:17,5439554
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 134)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10445291	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10445292	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11078567	0.92[AMR][1000 genomes]
rs11078568	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs11078569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes]
rs11078570	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11078573	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11649976	0.85[AMR][1000 genomes]
rs11649978	1.00[CEU][hapmap]
rs11650171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11650176	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11650380	0.92[AMR][1000 genomes]
rs11651072	0.85[AMR][1000 genomes]
rs11651595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs11651816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs11652692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes]
rs11653197	0.92[AMR][1000 genomes]
rs11653450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11653496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11653580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11653654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes]
rs11653832	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11653957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11654130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11654272	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs11654410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs11654528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs11654668	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs11654999	0.89[AFR][1000 genomes]
rs11655423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs11656039	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11656040	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11656183	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11656502	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11656724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs11656975	0.83[AMR][1000 genomes]
rs11656977	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs11657249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes]
rs11657320	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11657416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes]
rs11657747	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes]
rs11658716	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes]
rs12150026	0.92[AMR][1000 genomes]
rs12150286	0.92[AMR][1000 genomes]
rs12150289	0.92[AMR][1000 genomes]
rs12150292	0.92[AMR][1000 genomes]
rs12937062	1.00[AMR][1000 genomes]
rs12937100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12937334	1.00[AMR][1000 genomes]
rs12937745	1.00[JPT][hapmap]
rs12938206	0.85[AMR][1000 genomes]
rs12940290	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12940860	0.85[AMR][1000 genomes]
rs12940946	0.92[AMR][1000 genomes]
rs12941416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs12942931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs12943068	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs12946897	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs12947593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs12948705	0.85[AMR][1000 genomes]
rs12949957	1.00[CEU][hapmap]
rs12950024	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes]
rs12950235	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12950902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12952208	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12952718	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs12952870	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12952888	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2001363	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2137722	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs34031227	0.83[AMR][1000 genomes]
rs34198160	0.92[AMR][1000 genomes]
rs34273465	0.92[AMR][1000 genomes]
rs34402543	0.83[AMR][1000 genomes]
rs34402930	0.92[AMR][1000 genomes]
rs34456674	0.83[AMR][1000 genomes]
rs34541819	0.83[AMR][1000 genomes]
rs34634632	0.92[AMR][1000 genomes]
rs34700090	0.85[AMR][1000 genomes]
rs34733791	0.85[AMR][1000 genomes]
rs34878096	0.92[AMR][1000 genomes]
rs34885369	0.92[AMR][1000 genomes]
rs34888086	0.83[AMR][1000 genomes]
rs35063419	0.83[AMR][1000 genomes]
rs35186716	0.83[AMR][1000 genomes]
rs35291181	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35357500	0.83[AMR][1000 genomes]
rs35364521	0.83[AMR][1000 genomes]
rs35410467	0.92[AMR][1000 genomes]
rs35548793	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs35596958	0.85[AMR][1000 genomes]
rs35646276	0.83[AMR][1000 genomes]
rs35665358	0.92[AMR][1000 genomes]
rs35918709	0.83[AMR][1000 genomes]
rs35988870	0.83[AMR][1000 genomes]
rs36072614	0.85[AMR][1000 genomes]
rs36089653	0.92[AMR][1000 genomes]
rs36179145	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs56872041	0.85[AMR][1000 genomes]
rs60808948	0.85[AMR][1000 genomes]
rs61388575	0.85[AMR][1000 genomes]
rs71362567	0.92[AMR][1000 genomes]
rs71368180	0.83[AMR][1000 genomes]
rs71368181	0.83[AMR][1000 genomes]
rs71368554	0.85[AMR][1000 genomes]
rs71368555	0.85[AMR][1000 genomes]
rs71368556	0.85[AMR][1000 genomes]
rs71368557	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs71368561	0.83[AMR][1000 genomes]
rs71368562	0.83[AMR][1000 genomes]
rs71368563	0.83[AMR][1000 genomes]
rs71368564	0.83[AMR][1000 genomes]
rs71368565	0.83[AMR][1000 genomes]
rs71370068	0.83[AMR][1000 genomes]
rs7207278	0.92[AMR][1000 genomes]
rs7207641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes]
rs7215856	0.85[AMR][1000 genomes]
rs7215868	0.92[AMR][1000 genomes]
rs7216010	0.92[AMR][1000 genomes]
rs7222565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs7223362	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes]
rs7223514	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes]
rs7224037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs7224061	1.00[CEU][hapmap];0.92[AMR][1000 genomes]
rs7224071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes]
rs7224277	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs7226185	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs8070450	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs8070555	0.85[AMR][1000 genomes]
rs8074263	0.85[AMR][1000 genomes]
rs8077225	1.00[CHB][hapmap]
rs8078947	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs8079072	1.00[CEU][hapmap]
rs8079834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
NLRP1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)